Variant report

Variant	rs7778286
Chromosome Location	chr7:38578185-38578186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10237576	0.88[EUR][1000 genomes]
rs10241398	0.92[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1540480	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1540481	0.85[TSI][hapmap]
rs2118460	0.81[EUR][1000 genomes]
rs2118462	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2164838	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41478945	0.85[GIH][hapmap]
rs4385366	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59548988	1.00[ASN][1000 genomes]
rs6942910	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6949159	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs893412	0.82[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs893413	0.92[CEU][hapmap];0.98[GIH][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs920268	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9638941	0.82[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7778286	STARD3NL	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38563800-38578400	Weak transcription	Aorta	Aorta
2	chr7:38564200-38580800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:38564800-38578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38575000-38579200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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