Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12055899	0.88[CEU][hapmap]
rs12672949	0.88[EUR][1000 genomes]
rs2118462	0.84[ASN][1000 genomes]
rs2164838	0.91[ASN][1000 genomes]
rs3807395	0.85[EUR][1000 genomes]
rs3807398	0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs3807401	0.87[EUR][1000 genomes]
rs3807405	0.88[EUR][1000 genomes]
rs3807407	0.88[EUR][1000 genomes]
rs3823590	0.84[EUR][1000 genomes]
rs4385366	0.90[ASN][1000 genomes]
rs4723764	0.88[EUR][1000 genomes]
rs59548988	0.85[ASN][1000 genomes]
rs6942910	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs730582	0.88[TSI][hapmap]
rs7778286	0.82[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs7780577	0.88[EUR][1000 genomes]
rs7785138	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs893412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs920268	0.89[ASN][1000 genomes]
rs9639797	0.85[EUR][1000 genomes]
rs9639798	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38587400-38596000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38587600-38598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:38588200-38588800	Enhancers	Rectal Mucosa Donor 31	rectum

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