Variant report

Variant	rs7785138
Chromosome Location	chr7:38574457-38574458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10249892	0.93[ASN][1000 genomes]
rs12672949	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13243951	0.93[ASN][1000 genomes]
rs1971809	0.86[ASN][1000 genomes]
rs2164836	0.93[ASN][1000 genomes]
rs3807395	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807398	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807401	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807405	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807407	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3807409	0.93[ASN][1000 genomes]
rs3823590	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4723764	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7776979	0.93[ASN][1000 genomes]
rs7780577	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs893412	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9638941	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9639797	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9639798	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38563800-38578400	Weak transcription	Aorta	Aorta
2	chr7:38564200-38580800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:38564800-38578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38570400-38575400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:38571000-38574800	Weak transcription	Spleen	Spleen
6	chr7:38573200-38574600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:38573800-38574800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:38573800-38575600	Enhancers	Fetal Brain Male	brain
9	chr7:38574000-38575200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:38574400-38575000	Enhancers	Brain Germinal Matrix	brain
11	chr7:38574400-38575200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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