Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10249892	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10807897	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12672949	0.93[ASN][1000 genomes]
rs13243951	0.92[ASN][1000 genomes]
rs1545145	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2083146	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2164836	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2196674	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2392579	0.92[AFR][1000 genomes]
rs3807395	0.90[ASN][1000 genomes]
rs3807398	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs3807401	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3807405	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3807407	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3807409	0.93[ASN][1000 genomes]
rs3823590	0.90[ASN][1000 genomes]
rs4723764	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs730582	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7776979	0.93[ASN][1000 genomes]
rs7780577	0.91[ASN][1000 genomes]
rs7785138	0.86[ASN][1000 genomes]
rs9639797	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9639798	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:38524200-38545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38528600-38553000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:38531400-38544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:38531800-38543800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:38532000-38540200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:38533200-38542800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:38534200-38542400	Weak transcription	Aorta	Aorta

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