Variant report

Variant	rs3807395
Chromosome Location	chr7:38572212-38572213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:38572065-38572260	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SL83P	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10249892	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12055899	1.00[CEU][hapmap]
rs12535679	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12669128	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12672949	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13243951	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1971809	0.90[ASN][1000 genomes]
rs2072506	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2164836	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2270294	1.00[CEU][hapmap]
rs2276537	0.89[AMR][1000 genomes]
rs2302611	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2893560	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs3807398	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807401	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807405	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807407	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807409	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3823590	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723764	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952250	1.00[CEU][hapmap]
rs730582	1.00[CEU][hapmap]
rs7776979	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7780577	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7785138	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs893412	0.85[EUR][1000 genomes]
rs9638941	0.85[EUR][1000 genomes]
rs9639797	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9639798	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38563800-38578400	Weak transcription	Aorta	Aorta
2	chr7:38564200-38580800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:38564800-38578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38569600-38574000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:38570400-38575400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:38570800-38572400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:38571000-38573400	Weak transcription	Fetal Heart	heart
8	chr7:38571000-38574800	Weak transcription	Spleen	Spleen

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