Variant report

Variant	rs7779598
Chromosome Location	chr7:103359894-103359895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17154257	1.00[MEX][hapmap]
rs2299361	1.00[MEX][hapmap]
rs2299362	1.00[MEX][hapmap]
rs2382880	1.00[MEX][hapmap]
rs2382881	1.00[MEX][hapmap]
rs362699	1.00[MEX][hapmap]
rs57652685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950563	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952273	1.00[AMR][1000 genomes]
rs6956473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6978166	1.00[AMR][1000 genomes]
rs6978613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811905	1.00[MEX][hapmap]
rs9986712	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103355400-103374800	Weak transcription	HepG2	liver
2	chr7:103358000-103360400	Enhancers	HUVEC	blood vessel
3	chr7:103358200-103360400	Enhancers	NHEK	skin
4	chr7:103358600-103360400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:103358800-103360000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:103359000-103360200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:103359000-103360400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:103359000-103360400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:103359000-103360400	Enhancers	HMEC	breast
10	chr7:103359400-103363400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:103359600-103360000	Enhancers	K562	blood
12	chr7:103359600-103360200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:103359600-103360200	Flanking Active TSS	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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