Variant report

Variant	rs2382881
Chromosome Location	chr7:103314610-103314611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103313058..103315600-chr7:103766420..103769012,2	K562	blood:
2	chr7:103299107..103301619-chr7:103313448..103316125,2	K562	blood:
3	chr7:103313587..103316408-chr7:103317847..103320002,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10233007	1.00[MEX][hapmap]
rs10257295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10269791	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11976596	1.00[CHB][hapmap]
rs11979780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17154257	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2285335	1.00[JPT][hapmap]
rs2299342	1.00[ASN][1000 genomes]
rs2299347	1.00[ASN][1000 genomes]
rs2299349	1.00[ASN][1000 genomes]
rs2299350	1.00[ASN][1000 genomes]
rs2299361	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2299362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2382880	1.00[MEX][hapmap]
rs2382882	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[ASN][1000 genomes]
rs28784650	0.91[AFR][1000 genomes]
rs28862664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs362699	1.00[MEX][hapmap]
rs3757736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3819473	1.00[JPT][hapmap]
rs476736	1.00[JPT][hapmap]
rs491170	1.00[JPT][hapmap]
rs491921	1.00[JPT][hapmap]
rs496801	1.00[JPT][hapmap]
rs499998	1.00[JPT][hapmap]
rs549743	1.00[JPT][hapmap]
rs588423	1.00[JPT][hapmap]
rs59475294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs636187	1.00[JPT][hapmap]
rs638355	1.00[JPT][hapmap]
rs651488	1.00[JPT][hapmap]
rs665251	1.00[JPT][hapmap]
rs682018	1.00[JPT][hapmap]
rs683360	1.00[JPT][hapmap]
rs6958285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7779598	1.00[MEX][hapmap]
rs7810686	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7811905	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9770578	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9986712	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933167	chr7:103312181-103322483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103314400-103319800	Weak transcription	HepG2	liver

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