Variant report
| Variant | rs2285335 |
|---|---|
| Chromosome Location | chr7:103389983-103389984 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103308135..103310700-chr7:103389205..103391721,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10257295 | 1.00[JPT][hapmap] |
| rs10269791 | 1.00[JPT][hapmap] |
| rs11979780 | 1.00[JPT][hapmap] |
| rs17154257 | 1.00[JPT][hapmap] |
| rs2072405 | 1.00[CHB][hapmap] |
| rs2299361 | 1.00[JPT][hapmap] |
| rs2299362 | 1.00[JPT][hapmap] |
| rs2382881 | 1.00[JPT][hapmap] |
| rs2382882 | 1.00[JPT][hapmap] |
| rs3757736 | 1.00[JPT][hapmap] |
| rs3819473 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs476736 | 1.00[JPT][hapmap] |
| rs491170 | 1.00[JPT][hapmap] |
| rs491921 | 1.00[JPT][hapmap] |
| rs496801 | 1.00[JPT][hapmap] |
| rs499998 | 1.00[JPT][hapmap] |
| rs549743 | 1.00[JPT][hapmap] |
| rs588423 | 1.00[JPT][hapmap] |
| rs636187 | 1.00[JPT][hapmap] |
| rs638355 | 1.00[JPT][hapmap] |
| rs651488 | 1.00[JPT][hapmap] |
| rs665251 | 1.00[JPT][hapmap] |
| rs682018 | 1.00[JPT][hapmap] |
| rs683360 | 1.00[JPT][hapmap] |
| rs6958285 | 1.00[JPT][hapmap] |
| rs7810686 | 1.00[JPT][hapmap] |
| rs7811905 | 1.00[JPT][hapmap] |
| rs9986712 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv427799 | chr7:103250733-103454202 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103375200-103391000 | Weak transcription | HepG2 | liver |
| 2 | chr7:103389600-103390000 | ZNF genes & repeats | K562 | blood |
