Variant report

Variant	rs10257295
Chromosome Location	chr7:103346333-103346334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103270998..103273560-chr7:103345066..103347137,2	K562	blood:
2	chr7:103346006..103347594-chr7:103348639..103351482,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10229702	1.00[EUR][1000 genomes]
rs10234931	1.00[EUR][1000 genomes]
rs10235072	1.00[EUR][1000 genomes]
rs10242211	1.00[EUR][1000 genomes]
rs10261812	0.82[EUR][1000 genomes]
rs10265623	1.00[EUR][1000 genomes]
rs10269791	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10480649	1.00[EUR][1000 genomes]
rs11974290	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11976596	1.00[CHB][hapmap];0.81[AFR][1000 genomes]
rs11976809	1.00[ASN][1000 genomes]
rs11976904	1.00[EUR][1000 genomes]
rs11979780	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17154257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2285335	1.00[JPT][hapmap]
rs2299361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2299362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2301560	1.00[ASN][1000 genomes]
rs2382881	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2382882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3025969	1.00[EUR][1000 genomes]
rs3757736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3819473	1.00[JPT][hapmap]
rs476736	1.00[JPT][hapmap]
rs491170	1.00[JPT][hapmap]
rs491921	1.00[JPT][hapmap]
rs496801	1.00[JPT][hapmap]
rs499998	1.00[JPT][hapmap]
rs549743	1.00[JPT][hapmap]
rs56255035	1.00[EUR][1000 genomes]
rs588423	1.00[JPT][hapmap]
rs61411045	1.00[ASN][1000 genomes]
rs636187	1.00[JPT][hapmap]
rs638355	1.00[JPT][hapmap]
rs651488	1.00[JPT][hapmap]
rs665251	1.00[JPT][hapmap]
rs682018	1.00[JPT][hapmap]
rs683360	1.00[JPT][hapmap]
rs6958285	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6977938	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810686	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7811905	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9986712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103344000-103350600	Weak transcription	Hela-S3	cervix
3	chr7:103346000-103348000	Enhancers	HepG2	liver

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