Variant report

Variant	rs11976904
Chromosome Location	chr7:103279940-103279941
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10229702	1.00[EUR][1000 genomes]
rs10234931	1.00[EUR][1000 genomes]
rs10235072	1.00[EUR][1000 genomes]
rs10242211	1.00[EUR][1000 genomes]
rs10257295	1.00[EUR][1000 genomes]
rs10261812	0.82[EUR][1000 genomes]
rs10265623	1.00[EUR][1000 genomes]
rs10480649	1.00[EUR][1000 genomes]
rs11971486	1.00[AFR][1000 genomes]
rs11974290	1.00[EUR][1000 genomes]
rs3025969	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs362663	1.00[AFR][1000 genomes]
rs362679	1.00[AFR][1000 genomes]
rs362701	1.00[AFR][1000 genomes]
rs56255035	1.00[EUR][1000 genomes]
rs6977938	1.00[EUR][1000 genomes]
rs73410852	1.00[EUR][1000 genomes]
rs73410854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv516122	chr7:103274567-103291825	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103273000-103283600	Weak transcription	K562	blood
2	chr7:103277000-103281200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:103277000-103281200	Enhancers	NHDF-Ad	bronchial
4	chr7:103277000-103289200	Weak transcription	HepG2	liver
5	chr7:103277600-103281400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:103278800-103280600	Weak transcription	NHEK	skin
7	chr7:103278800-103280800	Weak transcription	HSMM	muscle
8	chr7:103278800-103281400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:103278800-103300800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:103279000-103280000	Weak transcription	NHLF	lung
11	chr7:103279000-103280600	Weak transcription	NH-A	brain
12	chr7:103279000-103281800	Weak transcription	HUVEC	blood vessel
13	chr7:103279200-103280600	Weak transcription	HMEC	breast
14	chr7:103279200-103280600	Weak transcription	Osteobl	bone
15	chr7:103279600-103280600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:103279600-103280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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