Variant report

Variant	rs10229702
Chromosome Location	chr7:103299665-103299666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103299093..103302989-chr7:103306962..103309461,4	K562	blood:
2	chr7:103298261..103300051-chr7:103303865..103306528,3	K562	blood:
3	chr7:103297074..103301566-chr7:103303216..103306956,8	K562	blood:
4	chr7:103253053..103254863-chr7:103298954..103300587,2	K562	blood:
5	chr7:103297764..103300699-chr7:103309943..103311774,3	K562	blood:
6	chr7:103299107..103301619-chr7:103313448..103316125,2	K562	blood:
7	chr7:103294590..103296926-chr7:103297378..103300214,2	MCF-7	breast:
8	chr7:103298022..103299710-chr7:103300574..103302831,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10234931	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10235072	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10242211	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10257295	1.00[EUR][1000 genomes]
rs10261812	0.82[EUR][1000 genomes]
rs10265623	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10480649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10480650	0.99[AFR][1000 genomes]
rs11974290	1.00[EUR][1000 genomes]
rs11976904	1.00[EUR][1000 genomes]
rs17154030	0.92[AFR][1000 genomes]
rs3025969	1.00[EUR][1000 genomes]
rs56255035	1.00[EUR][1000 genomes]
rs6977938	1.00[EUR][1000 genomes]
rs73410852	1.00[EUR][1000 genomes]
rs73410854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103278800-103300800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:103288800-103301000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103289000-103300800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:103290000-103300600	Weak transcription	Liver	Liver
5	chr7:103293800-103300800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:103297600-103300200	Enhancers	K562	blood
7	chr7:103298200-103305000	Enhancers	HepG2	liver
8	chr7:103299400-103300600	Weak transcription	Hela-S3	cervix
9	chr7:103299600-103300800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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