Variant report

Variant	rs362679
Chromosome Location	chr7:103242401-103242402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10487170	1.00[AMR][1000 genomes]
rs11971486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973365	1.00[AMR][1000 genomes]
rs11973718	1.00[AMR][1000 genomes]
rs11973791	1.00[AMR][1000 genomes]
rs11976809	1.00[AMR][1000 genomes]
rs11976904	1.00[AFR][1000 genomes]
rs11978937	1.00[AMR][1000 genomes]
rs11984057	1.00[AMR][1000 genomes]
rs28394382	1.00[AMR][1000 genomes]
rs3025946	1.00[AMR][1000 genomes]
rs3025947	1.00[AMR][1000 genomes]
rs3025951	1.00[AMR][1000 genomes]
rs3025969	0.89[AFR][1000 genomes]
rs34358617	1.00[AMR][1000 genomes]
rs362663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs362701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103206000-103243400	Weak transcription	K562	blood
2	chr7:103230400-103246200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103235000-103249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103239400-103248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:103240600-103244800	Weak transcription	Pancreas	Pancrea
6	chr7:103241400-103245000	Strong transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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