Variant report

Variant	rs28394382
Chromosome Location	chr7:103378854-103378855
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10487170	1.00[AMR][1000 genomes]
rs11971486	1.00[AMR][1000 genomes]
rs11973365	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11973718	1.00[AMR][1000 genomes]
rs11973791	1.00[AMR][1000 genomes]
rs11976809	1.00[AMR][1000 genomes]
rs11978937	1.00[AMR][1000 genomes]
rs11984057	1.00[AMR][1000 genomes]
rs3025946	1.00[AMR][1000 genomes]
rs3025947	1.00[AMR][1000 genomes]
rs3025951	1.00[AMR][1000 genomes]
rs34358617	1.00[AMR][1000 genomes]
rs362663	1.00[AMR][1000 genomes]
rs362679	1.00[AMR][1000 genomes]
rs362701	1.00[AMR][1000 genomes]
rs59698766	1.00[AMR][1000 genomes]
rs73712264	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518040	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv524344	chr7:103375437-103379897	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103375200-103391000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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