Variant report

Variant	rs11976809
Chromosome Location	chr7:103344779-103344780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10257295	1.00[ASN][1000 genomes]
rs10269791	1.00[ASN][1000 genomes]
rs10487170	1.00[AMR][1000 genomes]
rs11971486	1.00[AMR][1000 genomes]
rs11973365	1.00[AMR][1000 genomes]
rs11973718	1.00[AMR][1000 genomes]
rs11973791	1.00[AMR][1000 genomes]
rs11978937	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154257	1.00[ASN][1000 genomes]
rs2299361	1.00[ASN][1000 genomes]
rs2299362	0.89[ASN][1000 genomes]
rs2301560	1.00[ASN][1000 genomes]
rs28394382	1.00[AMR][1000 genomes]
rs3025946	1.00[AMR][1000 genomes]
rs3025947	1.00[AMR][1000 genomes]
rs3025951	1.00[AMR][1000 genomes]
rs34358617	1.00[AMR][1000 genomes]
rs362663	1.00[AMR][1000 genomes]
rs362679	1.00[AMR][1000 genomes]
rs362701	1.00[AMR][1000 genomes]
rs3757736	1.00[ASN][1000 genomes]
rs59698766	1.00[AMR][1000 genomes]
rs61411045	1.00[ASN][1000 genomes]
rs73410852	1.00[ASN][1000 genomes]
rs73410854	1.00[ASN][1000 genomes]
rs73712264	1.00[AMR][1000 genomes]
rs9986712	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103344000-103345000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:103344000-103350600	Weak transcription	Hela-S3	cervix
4	chr7:103344200-103346000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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