Variant report

Variant	rs77806
Chromosome Location	chr14:65253232-65253233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1626923	0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1695764	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs170684	0.88[ASN][1000 genomes]
rs1741485	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1741486	0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1741487	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1741488	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1741489	0.91[ASN][1000 genomes]
rs229629	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs229635	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs229638	0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs229640	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs229641	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs229642	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs229643	0.91[ASN][1000 genomes]
rs2357726	0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2357727	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2884253	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3819932	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56361624	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65228400-65265000	Weak transcription	Aorta	Aorta
2	chr14:65231600-65261400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65232200-65274200	Weak transcription	Gastric	stomach
4	chr14:65233000-65265600	Weak transcription	Fetal Brain Male	brain
5	chr14:65240400-65262800	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:65244800-65272400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:65245200-65257600	Weak transcription	HSMMtube	muscle
8	chr14:65250400-65271800	Strong transcription	Fetal Muscle Leg	muscle
9	chr14:65251000-65261000	Weak transcription	Brain Angular Gyrus	brain
10	chr14:65251200-65260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:65251200-65267400	Weak transcription	Fetal Kidney	kidney
12	chr14:65251400-65254200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:65251400-65254600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:65251400-65257200	Weak transcription	Right Ventricle	heart
15	chr14:65251400-65257400	Weak transcription	Brain Germinal Matrix	brain
16	chr14:65251400-65259600	Weak transcription	Brain Anterior Caudate	brain
17	chr14:65251600-65264400	Weak transcription	Fetal Heart	heart
18	chr14:65251800-65258000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:65252200-65265600	Weak transcription	Fetal Brain Female	brain
20	chr14:65252400-65253400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:65252600-65253600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:65252600-65274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:65252800-65253600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:65252800-65253600	Enhancers	HMEC	breast
25	chr14:65252800-65256600	Weak transcription	Left Ventricle	heart
26	chr14:65252800-65272600	Weak transcription	Psoas Muscle	Psoas
27	chr14:65253000-65253600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:65253000-65253600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:65253000-65253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:65253000-65253800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:65253000-65253800	Enhancers	Fetal Stomach	stomach
32	chr14:65253000-65254000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:65253000-65254200	Weak transcription	K562	blood
34	chr14:65253000-65255600	Enhancers	HUVEC	blood vessel
35	chr14:65253200-65253400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:65253200-65253600	Enhancers	Right Atrium	heart
37	chr14:65253200-65253600	Bivalent Enhancer	NHLF	lung
38	chr14:65253200-65253800	Genic enhancers	Fetal Muscle Trunk	muscle
39	chr14:65253200-65253800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
40	chr14:65253200-65254000	Enhancers	Spleen	Spleen

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