Variant report

Variant	rs7781158
Chromosome Location	chr7:12911330-12911331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12906060..12908256-chr7:12910264..12912774,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10249974	0.89[EUR][1000 genomes]
rs12112736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680996	1.00[CHB][hapmap]
rs2215334	0.82[EUR][1000 genomes]
rs28407859	0.89[EUR][1000 genomes]
rs28587853	0.94[EUR][1000 genomes]
rs55942807	0.80[ASN][1000 genomes]
rs58528138	0.89[EUR][1000 genomes]
rs62445809	0.88[EUR][1000 genomes]
rs62445810	0.88[EUR][1000 genomes]
rs62445811	0.88[EUR][1000 genomes]
rs62445812	0.94[EUR][1000 genomes]
rs62445825	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445826	0.94[EUR][1000 genomes]
rs62445827	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445828	0.88[EUR][1000 genomes]
rs62445829	0.88[EUR][1000 genomes]
rs62445831	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62445832	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62445833	0.88[EUR][1000 genomes]
rs62445834	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445837	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445838	0.94[EUR][1000 genomes]
rs62445851	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445853	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445854	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445855	0.94[EUR][1000 genomes]
rs62445856	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62445857	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62448165	1.00[EUR][1000 genomes]
rs62448166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62448167	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62448168	1.00[EUR][1000 genomes]
rs62448170	0.89[EUR][1000 genomes]
rs62448183	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6956351	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960791	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6961220	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6966108	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966517	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs764903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7780699	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7793712	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7794334	0.89[EUR][1000 genomes]
rs7796721	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv464382	chr7:12907178-12972685	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv606237	chr7:12907178-12972685	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv824013	chr7:12909669-12915411	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links