Variant report

Variant	rs7783626
Chromosome Location	chr7:147337742-147337743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10243377	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10258558	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10265680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs1074676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17170626	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1860135	0.82[MEX][hapmap]
rs28728281	0.86[ASN][1000 genomes]
rs6977062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6979463	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790896	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7801452	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803800	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv516942	chr7:147337742-147354931	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7783626	OR2A2	cis	cerebellum	SCAN
rs7783626	ZNF767	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147333200-147338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:147336200-147337800	Active TSS	Brain Anterior Caudate	brain
3	chr7:147336200-147337800	Active TSS	Brain Cingulate Gyrus	brain
4	chr7:147336200-147338000	Active TSS	Brain Hippocampus Middle	brain
5	chr7:147336200-147338800	Active TSS	Brain Substantia Nigra	brain
6	chr7:147336600-147338200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:147337000-147337800	Enhancers	Fetal Stomach	stomach
8	chr7:147337000-147338600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:147337600-147337800	Flanking Active TSS	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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