Variant report

Variant	rs10243377
Chromosome Location	chr7:147335023-147335024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10258558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265680	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1074676	1.00[JPT][hapmap]
rs13438715	0.81[MEX][hapmap]
rs17170626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28728281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688811	1.00[EUR][1000 genomes]
rs56130548	1.00[EUR][1000 genomes]
rs6975461	0.98[EUR][1000 genomes]
rs6977062	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6979463	0.86[ASN][1000 genomes]
rs73164392	1.00[EUR][1000 genomes]
rs73164393	1.00[EUR][1000 genomes]
rs73164394	1.00[EUR][1000 genomes]
rs73164396	1.00[EUR][1000 genomes]
rs7783626	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7790896	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7801452	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10243377	FAM131B	cis	parietal	SCAN
rs10243377	OR2F2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147333200-147338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:147334400-147335800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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