Variant report

Variant	rs7784752
Chromosome Location	chr7:38243262-38243263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1019180	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10233340	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10240479	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10282407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10480164	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10951552	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766312	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766341	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12531618	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17171307	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1860522	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2159499	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2159501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35997004	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723733	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723734	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55864286	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462817	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6462818	0.95[AFR][1000 genomes]
rs6975531	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7788819	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795499	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv830964	chr7:38218708-38390518	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv1030349	chr7:38227528-38372719	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv538818	chr7:38227528-38372719	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1025974	chr7:38227528-38503472	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv538819	chr7:38227528-38503472	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv433041	chr7:38229107-38358728	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv433044	chr7:38238119-38358728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7784752	STARD3NL	cis	Thyroid	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38218600-38259200	Weak transcription	Colonic Mucosa	Colon
2	chr7:38220200-38246600	Weak transcription	Fetal Thymus	thymus
3	chr7:38220200-38254800	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:38220400-38247000	Weak transcription	Fetal Intestine Small	intestine
5	chr7:38221000-38246800	Weak transcription	Primary T cells from cord blood	blood
6	chr7:38223600-38255600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:38225000-38247000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:38228000-38256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:38228200-38254400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:38228800-38247200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:38229200-38249200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:38229600-38246600	Weak transcription	Primary B cells from cord blood	blood
13	chr7:38229800-38246400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:38230200-38259200	Weak transcription	K562	blood
15	chr7:38231600-38247200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:38232000-38246800	Weak transcription	Fetal Lung	lung
17	chr7:38232400-38247200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:38232400-38255000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:38232800-38255200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:38232800-38256000	Weak transcription	Fetal Brain Male	brain
21	chr7:38234400-38247200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:38235200-38251400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:38235800-38249000	Weak transcription	Thymus	Thymus
24	chr7:38235800-38251200	Weak transcription	Fetal Kidney	kidney
25	chr7:38236000-38245800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:38236000-38246400	Weak transcription	Fetal Brain Female	brain
27	chr7:38236000-38247000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:38236000-38247000	Weak transcription	Brain Anterior Caudate	brain
29	chr7:38236000-38247000	Weak transcription	GM12878-XiMat	blood
30	chr7:38236000-38250800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:38236000-38252000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:38236000-38254200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:38236000-38254600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:38236400-38254800	Weak transcription	Brain Germinal Matrix	brain
35	chr7:38236800-38246400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:38236800-38246600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr7:38236800-38247000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:38236800-38250600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:38236800-38254600	Weak transcription	Small Intestine	intestine
40	chr7:38236800-38261600	Weak transcription	HMEC	breast
41	chr7:38237000-38246600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:38237000-38247000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr7:38237000-38249200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:38237000-38255200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr7:38237200-38255600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:38237600-38246800	Weak transcription	Dnd41	blood
47	chr7:38237600-38258600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:38237800-38246400	Weak transcription	HSMM	muscle
49	chr7:38237800-38247000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:38237800-38251400	Weak transcription	Right Ventricle	heart

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