Variant report

Variant	rs7784961
Chromosome Location	chr7:50256021-50256022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50249185..50251985-chr7:50254623..50256647,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58554383	1.00[AMR][1000 genomes]
rs73344204	1.00[AMR][1000 genomes]
rs73344208	1.00[AMR][1000 genomes]
rs73344210	1.00[AMR][1000 genomes]
rs73344213	1.00[AMR][1000 genomes]
rs73344219	1.00[AMR][1000 genomes]
rs73346263	1.00[AMR][1000 genomes]
rs73346265	1.00[AMR][1000 genomes]
rs73346272	1.00[AMR][1000 genomes]
rs73346275	1.00[AMR][1000 genomes]
rs73346278	1.00[AMR][1000 genomes]
rs73346280	1.00[AMR][1000 genomes]
rs73346294	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1020285	chr7:50229750-50258911	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50241600-50259000	Enhancers	Fetal Thymus	thymus
2	chr7:50245400-50256400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:50245600-50256200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr7:50246600-50257600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:50246600-50257800	Enhancers	Thymus	Thymus
6	chr7:50246600-50258000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:50246600-50258600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:50246800-50258600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:50247200-50260400	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:50249400-50259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:50250600-50257800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:50251800-50261600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:50253400-50256600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:50253800-50257000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:50253800-50258000	Enhancers	Primary T cells from cord blood	blood
16	chr7:50253800-50259000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr7:50254400-50257400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:50254400-50257400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:50254400-50257400	Weak transcription	Dnd41	blood
20	chr7:50255200-50256800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr7:50255200-50258400	Enhancers	Primary B cells from cord blood	blood
22	chr7:50255800-50256600	Enhancers	Brain Hippocampus Middle	brain
23	chr7:50255800-50257600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:50255800-50257600	Weak transcription	Spleen	Spleen
25	chr7:50255800-50259200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:50256000-50256200	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:50256000-50259200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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