Variant report

Variant	rs73346278
Chromosome Location	chr7:50299212-50299213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12718256	0.95[AFR][1000 genomes]
rs13223169	0.95[AFR][1000 genomes]
rs13230749	0.95[AFR][1000 genomes]
rs34740011	0.95[AFR][1000 genomes]
rs34754739	0.95[AFR][1000 genomes]
rs35220048	0.95[AFR][1000 genomes]
rs4299958	0.95[AFR][1000 genomes]
rs55777009	1.00[ASN][1000 genomes]
rs58554383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61283652	1.00[ASN][1000 genomes]
rs61339774	0.95[AFR][1000 genomes]
rs6956110	0.95[AFR][1000 genomes]
rs6963387	0.95[AFR][1000 genomes]
rs6978502	1.00[ASN][1000 genomes]
rs73344204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344215	0.95[AFR][1000 genomes]
rs73344219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346247	0.95[AFR][1000 genomes]
rs73346249	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346294	1.00[AMR][1000 genomes]
rs73698012	1.00[ASN][1000 genomes]
rs7784961	1.00[AMR][1000 genomes]
rs7790034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50298000-50300800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr7:50298000-50301800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:50298000-50304000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:50298000-50306200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:50298200-50301000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:50298400-50299400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:50299000-50301200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:50299000-50306000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:50299200-50300000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr7:50299200-50305600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr7:50299200-50305800	Enhancers	Primary T helper cells fromperipheralblood	blood

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