Variant report

Variant	rs7790034
Chromosome Location	chr7:50309926-50309927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50306184..50310421-chr7:50320200..50324356,4	K562	blood:
2	chr7:50301953..50305153-chr7:50308308..50311293,3	K562	blood:
3	chr7:50308921..50311728-chr7:50321396..50323207,2	K562	blood:
4	chr7:50301953..50306241-chr7:50308308..50311979,4	K562	blood:
5	chr7:50306288..50308049-chr7:50308431..50310072,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55777009	1.00[ASN][1000 genomes]
rs58554383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61283652	1.00[ASN][1000 genomes]
rs6978502	1.00[ASN][1000 genomes]
rs73344204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346278	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73346280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698012	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50301800-50310000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:50305200-50310400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:50306800-50314600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr7:50307000-50310600	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:50307000-50310600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:50307000-50310600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr7:50307200-50310600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:50307200-50314800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr7:50307200-50317600	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:50307400-50310000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:50307400-50310000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr7:50307400-50310400	Enhancers	Thymus	Thymus
13	chr7:50307400-50314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:50307400-50316200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr7:50307600-50310000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:50307600-50310000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:50307600-50310600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr7:50307600-50310600	Enhancers	Fetal Thymus	thymus
19	chr7:50307600-50315600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:50307800-50311000	Enhancers	Primary B cells from cord blood	blood
21	chr7:50307800-50314800	Enhancers	Primary T cells from cord blood	blood
22	chr7:50308200-50310800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr7:50308200-50311000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:50308200-50311200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr7:50308200-50312200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:50308200-50313600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr7:50308600-50310400	Enhancers	Dnd41	blood
28	chr7:50308600-50316200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr7:50309000-50310000	Weak transcription	Spleen	Spleen
30	chr7:50309800-50310600	Flanking Active TSS	GM12878-XiMat	blood

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