Variant report

Variant	rs7787581
Chromosome Location	chr7:151083391-151083392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:151070052..151072048-chr7:151082602..151084194,2	K562	blood:
2	chr7:151074259..151076464-chr7:151081885..151083663,2	MCF-7	breast:
3	chr7:151052822..151054641-chr7:151083367..151085322,2	MCF-7	breast:
4	chr7:151081208..151084105-chr7:151086601..151088830,2	MCF-7	breast:
5	chr7:151082173..151083801-chr7:151092473..151095003,2	MCF-7	breast:
6	chr7:151077730..151080062-chr7:151081666..151085996,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187260	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10952309	0.91[ASN][1000 genomes]
rs2286417	0.89[ASN][1000 genomes]
rs4726019	0.89[ASN][1000 genomes]
rs732749	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7787581	NUB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151074400-151095000	Weak transcription	Fetal Kidney	kidney
2	chr7:151076600-151083600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:151076800-151094800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:151077200-151094200	Weak transcription	Dnd41	blood
5	chr7:151077400-151095000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:151079400-151089200	Weak transcription	Right Atrium	heart
7	chr7:151080200-151095200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:151081000-151095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:151081200-151086600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:151081600-151094000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:151082000-151097400	Strong transcription	Fetal Brain Female	brain
12	chr7:151082200-151085200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr7:151082200-151087000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:151082400-151083600	Enhancers	Esophagus	oesophagus
15	chr7:151082400-151084000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
16	chr7:151082400-151084400	Enhancers	Fetal Muscle Leg	muscle
17	chr7:151082400-151085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:151082600-151085200	Enhancers	Spleen	Spleen
19	chr7:151082800-151084200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr7:151082800-151085000	Strong transcription	Brain Germinal Matrix	brain
21	chr7:151082800-151090400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:151083000-151083400	Weak transcription	Fetal Lung	lung
23	chr7:151083000-151084800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:151083200-151083600	Enhancers	Hela-S3	cervix
25	chr7:151083200-151083800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:151083200-151089800	Weak transcription	Gastric	stomach

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