Variant report

Variant	rs732749
Chromosome Location	chr7:151079521-151079522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:151078147..151081068-chr7:151136680..151139312,2	K562	blood:
2	chr7:151063920..151066757-chr7:151078429..151081026,2	K562	blood:
3	chr7:151077370..151082377-chr7:151091271..151094481,5	K562	blood:
4	chr7:151077730..151080062-chr7:151081666..151085996,4	MCF-7	breast:
5	chr7:151075761..151078225-chr7:151078438..151081089,3	K562	blood:
6	chr7:151079183..151083244-chr7:151083923..151090785,10	K562	blood:
7	chr7:151078562..151081117-chr7:151170071..151171599,2	K562	blood:
8	chr7:151074970..151076723-chr7:151078624..151081046,2	K562	blood:
9	chr7:151076539..151080884-chr7:151119951..151124018,3	K562	blood:
10	chr7:151070295..151074427-chr7:151076318..151079969,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187260	Chromatin interaction
ENSG00000013374	Chromatin interaction
ENSG00000127377	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10952309	0.88[ASN][1000 genomes]
rs2286417	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726019	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6963048	0.85[ASN][1000 genomes]
rs7787581	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151065800-151080800	Weak transcription	HMEC	breast
2	chr7:151066000-151083200	Weak transcription	Hela-S3	cervix
3	chr7:151074400-151095000	Weak transcription	Fetal Kidney	kidney
4	chr7:151076600-151083600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:151076800-151094800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:151077200-151094200	Weak transcription	Dnd41	blood
7	chr7:151077400-151095000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:151078000-151079600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:151078000-151079600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:151078000-151079600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr7:151078000-151079600	Bivalent Enhancer	Stomach Mucosa	stomach
12	chr7:151078000-151079600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
13	chr7:151078000-151079800	Bivalent Enhancer	Fetal Stomach	stomach
14	chr7:151078000-151080000	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr7:151078000-151080000	Bivalent Enhancer	Fetal Thymus	thymus
16	chr7:151078200-151079600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:151078400-151079600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr7:151078400-151079600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:151078400-151079600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
20	chr7:151078400-151079800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr7:151078400-151079800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:151078400-151079800	Flanking Active TSS	Right Ventricle	heart
23	chr7:151078400-151080000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr7:151078600-151079600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
25	chr7:151078600-151079600	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr7:151078600-151079600	Bivalent Enhancer	NH-A	brain
27	chr7:151078600-151079800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr7:151078800-151079600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
29	chr7:151078800-151079600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
30	chr7:151078800-151079600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr7:151078800-151079600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr7:151078800-151079600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr7:151078800-151079600	Bivalent Enhancer	Liver	Liver
34	chr7:151078800-151079600	Bivalent Enhancer	Fetal Intestine Small	intestine
35	chr7:151078800-151080000	Bivalent Enhancer	Fetal Brain Male	brain
36	chr7:151079000-151079600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr7:151079000-151079600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:151079000-151079600	Bivalent Enhancer	Brain Angular Gyrus	brain
39	chr7:151079000-151079600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr7:151079000-151079600	Bivalent Enhancer	Left Ventricle	heart
41	chr7:151079000-151079600	Enhancers	Pancreas	Pancrea
42	chr7:151079000-151079800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
43	chr7:151079000-151079800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
44	chr7:151079000-151079800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
45	chr7:151079000-151080000	Enhancers	Spleen	Spleen
46	chr7:151079200-151079600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:151079200-151079600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:151079200-151079600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:151079200-151079600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:151079200-151079600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood

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