Variant report

Variant	rs6963048
Chromosome Location	chr7:151069296-151069297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:151068798..151071026-chr7:151072927..151076533,4	MCF-7	breast:
2	chr7:151069282..151072018-chr7:151127923..151130799,2	K562	blood:
3	chr7:151066882..151069629-chr7:151101461..151103450,2	K562	blood:
4	chr7:151069077..151072018-chr7:151127923..151130145,2	K562	blood:
5	chr7:151066757..151069620-chr7:151185303..151187509,2	K562	blood:

Variant related genes	Relation type
ENSG00000265810	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13226693	0.84[CHB][hapmap]
rs1468510	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2286417	0.87[ASN][1000 genomes]
rs4726019	0.87[ASN][1000 genomes]
rs4726021	0.89[CEU][hapmap]
rs731995	1.00[ASW][hapmap];0.84[CHD][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs732749	0.85[ASN][1000 genomes]
rs874607	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6963048	XRCC2	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151039400-151069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:151049200-151072600	Weak transcription	Fetal Brain Male	brain
3	chr7:151049400-151077000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:151049400-151078000	Weak transcription	Stomach Mucosa	stomach
5	chr7:151053800-151073000	Weak transcription	Psoas Muscle	Psoas
6	chr7:151054000-151073200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:151054200-151071800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:151055800-151069600	Weak transcription	Gastric	stomach
9	chr7:151057600-151070600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:151058800-151069600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:151059600-151069600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:151059800-151069800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:151059800-151078000	Weak transcription	HUVEC	blood vessel
14	chr7:151060000-151069400	Weak transcription	HepG2	liver
15	chr7:151060200-151069600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:151060200-151070400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:151060400-151069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:151060800-151072800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:151061000-151070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:151062400-151076600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:151063400-151076400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:151063400-151078400	Weak transcription	Right Atrium	heart
23	chr7:151063600-151070600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:151064200-151071400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:151064400-151077800	Strong transcription	Fetal Intestine Large	intestine
26	chr7:151064600-151076200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr7:151064800-151076200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:151065000-151072800	Strong transcription	Primary B cells from cord blood	blood
29	chr7:151065600-151069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:151065600-151070800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:151065600-151071000	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:151065600-151071400	Weak transcription	NHEK	skin
33	chr7:151065600-151072600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:151065600-151076200	Strong transcription	Ovary	ovary
35	chr7:151065600-151076200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:151065600-151076400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr7:151065600-151077000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:151065600-151077000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:151065600-151077200	Strong transcription	Fetal Stomach	stomach
40	chr7:151065600-151077400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr7:151065600-151077800	Weak transcription	NHDF-Ad	bronchial
42	chr7:151065600-151078000	Strong transcription	Fetal Intestine Small	intestine
43	chr7:151065600-151078200	Weak transcription	NH-A	brain
44	chr7:151065800-151069600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:151065800-151070400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr7:151065800-151070600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:151065800-151070600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:151065800-151070600	Weak transcription	NHLF	lung
49	chr7:151065800-151072800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr7:151065800-151074000	Weak transcription	Fetal Kidney	kidney

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