Variant report

Variant	rs874607
Chromosome Location	chr7:151064872-151064873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:151064202-151065862	A549	lung:	n/a	chr7:151064713-151064726
2	CTCF	chr7:151064622-151064895	IMR90	lung:	n/a	chr7:151064713-151064726
3	CTCF	chr7:151064411-151066117	SK-N-SH	brain:	n/a	chr7:151064713-151064726
4	CTCF	chr7:151064860-151065010	BJ	skin:	n/a	n/a
5	RAD21	chr7:151064517-151066160	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:151063878..151065937-chr7:151090864..151093104,2	K562	blood:
2	chr7:151036395..151039308-chr7:151063026..151066018,3	K562	blood:
3	chr7:151064025..151065962-chr7:151214684..151217596,2	MCF-7	breast:
4	chr7:151062337..151064944-chr7:151144417..151146398,2	K562	blood:

Variant related genes	Relation type
NUB1	TF binding region
ENSG00000187260	Chromatin interaction
ENSG00000013374	Chromatin interaction
ENSG00000106615	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6963048	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs874607	FASTK	cis	parietal	SCAN
rs874607	KRBA1	cis	parietal	SCAN
rs874607	ATG9B	cis	cerebellum	SCAN
rs874607	ZNF786	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151039400-151069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:151049200-151072600	Weak transcription	Fetal Brain Male	brain
3	chr7:151049400-151077000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:151049400-151078000	Weak transcription	Stomach Mucosa	stomach
5	chr7:151051200-151069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:151053600-151065200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:151053600-151065200	Weak transcription	NHEK	skin
8	chr7:151053600-151065400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:151053600-151065400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:151053800-151073000	Weak transcription	Psoas Muscle	Psoas
11	chr7:151054000-151073200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:151054200-151071800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:151055800-151065800	Weak transcription	Spleen	Spleen
14	chr7:151055800-151069200	Weak transcription	Esophagus	oesophagus
15	chr7:151055800-151069600	Weak transcription	Gastric	stomach
16	chr7:151057600-151070600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:151058000-151065800	Weak transcription	Brain Substantia Nigra	brain
18	chr7:151058200-151065200	Weak transcription	Ovary	ovary
19	chr7:151058800-151066600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:151058800-151069600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:151059600-151065200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:151059600-151069600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:151059800-151065400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:151059800-151069800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:151059800-151078000	Weak transcription	HUVEC	blood vessel
26	chr7:151060000-151066600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:151060000-151067000	Weak transcription	Colonic Mucosa	Colon
28	chr7:151060000-151068000	Weak transcription	Lung	lung
29	chr7:151060000-151068600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:151060000-151068600	Weak transcription	Aorta	Aorta
31	chr7:151060000-151069400	Weak transcription	HepG2	liver
32	chr7:151060200-151065000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:151060200-151065400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:151060200-151065400	Weak transcription	HMEC	breast
35	chr7:151060200-151065600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:151060200-151069200	Weak transcription	Brain Germinal Matrix	brain
37	chr7:151060200-151069600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:151060200-151070400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:151060400-151065000	Weak transcription	Primary B cells from cord blood	blood
40	chr7:151060400-151065200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:151060400-151065400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr7:151060400-151065400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:151060400-151065400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:151060400-151065400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:151060400-151065400	Weak transcription	Thymus	Thymus
46	chr7:151060400-151065600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:151060400-151066600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr7:151060400-151067000	Weak transcription	Right Ventricle	heart
49	chr7:151060400-151068200	Weak transcription	Fetal Brain Female	brain
50	chr7:151060400-151069000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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