Variant report

Variant	rs7787720
Chromosome Location	chr7:13886654-13886655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1019029	0.92[EUR][1000 genomes]
rs10950494	0.81[ASN][1000 genomes]
rs10950495	0.84[ASN][1000 genomes]
rs11973709	0.93[ASN][1000 genomes]
rs12154701	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12666980	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17167575	0.88[ASN][1000 genomes]
rs17167576	0.88[ASN][1000 genomes]
rs17167580	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs17167582	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs17167587	0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2190326	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34695370	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34722091	0.81[ASN][1000 genomes]
rs34863470	0.88[ASN][1000 genomes]
rs35200032	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35559105	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3944098	0.95[EUR][1000 genomes]
rs4719382	0.82[ASN][1000 genomes]
rs62452244	0.87[ASN][1000 genomes]
rs7795991	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv433032	chr7:13792450-13911001	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv887697	chr7:13841798-13899446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv887699	chr7:13868601-13899446	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1015919	chr7:13873800-13908250	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv516692	chr7:13875122-13907827	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13881000-13889400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:13885000-13889800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:13885600-13886800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:13885800-13888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:13886200-13890200	Enhancers	Fetal Lung	lung
6	chr7:13886200-13892200	Enhancers	NHDF-Ad	bronchial
7	chr7:13886400-13887000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:13886400-13888600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:13886400-13888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:13886600-13888000	Weak transcription	Osteobl	bone

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