Variant report

Variant	rs7788673
Chromosome Location	chr7:79908084-79908085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081383	0.82[EUR][1000 genomes]
rs10249625	0.80[EUR][1000 genomes]
rs12666091	0.95[ASN][1000 genomes]
rs13222182	0.80[EUR][1000 genomes]
rs13224358	0.81[EUR][1000 genomes]
rs13230620	0.80[JPT][hapmap]
rs2158123	0.81[EUR][1000 genomes]
rs4731318	0.85[EUR][1000 genomes]
rs7792873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656355	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2761340	chr7:79905897-79922486	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79898800-79911000	Weak transcription	Small Intestine	intestine
2	chr7:79905600-79911000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:79905800-79909000	Weak transcription	Left Ventricle	heart
4	chr7:79905800-79909400	Enhancers	Hela-S3	cervix
5	chr7:79906200-79910200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:79906400-79908400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:79906400-79908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:79906400-79908400	Enhancers	Fetal Kidney	kidney
9	chr7:79906400-79909000	Enhancers	Colon Smooth Muscle	Colon
10	chr7:79906400-79909400	Enhancers	Fetal Intestine Small	intestine
11	chr7:79906600-79908200	Flanking Active TSS	NHEK	skin
12	chr7:79906600-79908400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:79906600-79909200	Enhancers	Adipose Nuclei	Adipose
14	chr7:79906600-79909200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr7:79906600-79912800	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:79906800-79908200	Enhancers	NH-A	brain
17	chr7:79906800-79908400	Enhancers	NHDF-Ad	bronchial
18	chr7:79906800-79908600	Enhancers	Duodenum Mucosa	Duodenum
19	chr7:79906800-79909200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr7:79907000-79908200	Enhancers	Brain Substantia Nigra	brain
21	chr7:79907000-79909600	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:79907200-79908200	Enhancers	Brain Cingulate Gyrus	brain
23	chr7:79907200-79908200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr7:79907200-79908400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr7:79907400-79908400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:79907400-79909400	Weak transcription	Ovary	ovary
27	chr7:79907400-79916400	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:79907600-79908400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:79907600-79909000	Weak transcription	HSMMtube	muscle
30	chr7:79907800-79908400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:79907800-79908600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:79907800-79909000	Weak transcription	HUVEC	blood vessel
33	chr7:79907800-79914000	Weak transcription	Fetal Lung	lung
34	chr7:79908000-79908200	Flanking Active TSS	A549	lung
35	chr7:79908000-79908800	Enhancers	Dnd41	blood
36	chr7:79908000-79909000	Weak transcription	Fetal Intestine Large	intestine
37	chr7:79908000-79916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:79908000-79916600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links