Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10081383	0.93[EUR][1000 genomes]
rs10245039	0.90[EUR][1000 genomes]
rs10249625	0.91[EUR][1000 genomes]
rs13222182	0.91[EUR][1000 genomes]
rs13224358	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13233772	0.90[EUR][1000 genomes]
rs13234088	0.90[EUR][1000 genomes]
rs13237208	0.90[EUR][1000 genomes]
rs13237302	0.90[EUR][1000 genomes]
rs13237312	0.89[EUR][1000 genomes]
rs2158123	0.93[EUR][1000 genomes]
rs304732	0.86[ASN][1000 genomes]
rs306728	0.84[ASN][1000 genomes]
rs37919	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs37921	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs37929	0.85[ASN][1000 genomes]
rs37930	0.84[ASN][1000 genomes]
rs37935	0.82[JPT][hapmap]
rs37936	0.82[JPT][hapmap]
rs43222	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4731329	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4731336	0.86[ASN][1000 genomes]
rs475103	0.96[ASN][1000 genomes]
rs493722	0.87[ASN][1000 genomes]
rs504540	0.92[ASN][1000 genomes]
rs579611	0.96[ASN][1000 genomes]
rs601671	0.96[ASN][1000 genomes]
rs623820	0.92[ASN][1000 genomes]
rs673193	0.96[ASN][1000 genomes]
rs67417372	0.90[EUR][1000 genomes]
rs7788673	0.85[EUR][1000 genomes]
rs7792873	0.85[EUR][1000 genomes]
rs9656355	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2761340	chr7:79905897-79922486	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79906600-79912800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:79907400-79916400	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:79907800-79914000	Weak transcription	Fetal Lung	lung
4	chr7:79908000-79916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:79908000-79916600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:79908200-79916400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:79909200-79912800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:79909200-79912800	Weak transcription	Psoas Muscle	Psoas
9	chr7:79909400-79914000	Weak transcription	HSMMtube	muscle
10	chr7:79909400-79916400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:79909600-79914200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:79910200-79914000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:79912400-79913000	Enhancers	Colon Smooth Muscle	Colon
14	chr7:79912600-79913200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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