Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10226374	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10954137	0.82[EUR][1000 genomes]
rs13224358	0.90[ASN][1000 genomes]
rs13226877	0.82[EUR][1000 genomes]
rs13229096	0.86[EUR][1000 genomes]
rs13238619	0.86[EUR][1000 genomes]
rs13243724	0.82[EUR][1000 genomes]
rs1995971	0.88[EUR][1000 genomes]
rs2048474	0.91[EUR][1000 genomes]
rs28584961	0.89[EUR][1000 genomes]
rs304732	0.96[ASN][1000 genomes]
rs306728	0.94[ASN][1000 genomes]
rs37919	0.87[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs37921	0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs37929	0.95[ASN][1000 genomes]
rs37930	0.94[ASN][1000 genomes]
rs43222	0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4731318	0.86[ASN][1000 genomes]
rs4731329	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs475103	0.86[ASN][1000 genomes]
rs493722	0.97[ASN][1000 genomes]
rs504540	0.90[ASN][1000 genomes]
rs579611	0.90[ASN][1000 genomes]
rs601671	0.86[ASN][1000 genomes]
rs623820	0.92[ASN][1000 genomes]
rs673193	0.90[ASN][1000 genomes]
rs7782930	0.85[EUR][1000 genomes]
rs7785183	0.88[EUR][1000 genomes]
rs7797587	0.88[EUR][1000 genomes]
rs7798039	0.85[EUR][1000 genomes]
rs979425	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79932600-79938800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79932800-79938800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:79936800-79941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:79936800-79941200	Weak transcription	Osteobl	bone
5	chr7:79937000-79938800	Weak transcription	Primary T cells from cord blood	blood
6	chr7:79937000-79941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:79937000-79941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:79937200-79941000	Weak transcription	A549	lung
9	chr7:79937200-79941000	Weak transcription	HMEC	breast
10	chr7:79937200-79941200	Weak transcription	NHLF	lung
11	chr7:79937200-79941400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:79937200-79949000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:79937400-79940000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:79937400-79940400	Weak transcription	NHEK	skin
15	chr7:79937400-79941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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