Variant report

Variant	rs13226877
Chromosome Location	chr7:79914661-79914662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10081383	1.00[ASN][1000 genomes]
rs10215570	0.85[ASN][1000 genomes]
rs10224409	0.85[ASN][1000 genomes]
rs10226374	0.89[ASN][1000 genomes]
rs10235376	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245039	0.94[ASN][1000 genomes]
rs10246790	0.90[ASN][1000 genomes]
rs10249625	1.00[ASN][1000 genomes]
rs10269645	0.85[ASN][1000 genomes]
rs10954137	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13222182	0.98[ASN][1000 genomes]
rs13229096	0.89[ASN][1000 genomes]
rs13230620	0.87[ASN][1000 genomes]
rs13233772	0.96[ASN][1000 genomes]
rs13234088	0.99[ASN][1000 genomes]
rs13237208	0.96[ASN][1000 genomes]
rs13237302	0.99[ASN][1000 genomes]
rs13237312	0.99[ASN][1000 genomes]
rs13238619	0.90[ASN][1000 genomes]
rs13243724	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1995971	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048474	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2158123	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28584961	0.89[ASN][1000 genomes]
rs28875814	0.85[ASN][1000 genomes]
rs3914181	0.85[ASN][1000 genomes]
rs4731329	0.91[EUR][1000 genomes]
rs4731336	0.82[EUR][1000 genomes]
rs67417372	0.96[ASN][1000 genomes]
rs7782930	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7785183	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7797587	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7798039	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9656355	0.96[ASN][1000 genomes]
rs979425	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2761340	chr7:79905897-79922486	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79907400-79916400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:79908000-79916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:79908000-79916600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:79908200-79916400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:79909400-79916400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:79912800-79914800	Enhancers	Adipose Nuclei	Adipose
7	chr7:79913400-79922000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:79913600-79915000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:79913600-79916800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:79913800-79915200	Enhancers	Fetal Brain Male	brain
11	chr7:79914000-79914800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:79914000-79914800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:79914000-79914800	Enhancers	NH-A	brain
14	chr7:79914000-79915000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:79914000-79915000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:79914000-79915000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:79914000-79915000	Enhancers	Colon Smooth Muscle	Colon
18	chr7:79914000-79915000	Enhancers	Osteobl	bone
19	chr7:79914200-79914800	Enhancers	NHDF-Ad	bronchial
20	chr7:79914400-79914800	Enhancers	Fetal Brain Female	brain
21	chr7:79914400-79915200	Enhancers	Liver	Liver
22	chr7:79914600-79915000	Enhancers	NHLF	lung

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