Variant report

Variant	rs28584961
Chromosome Location	chr7:79938078-79938079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10081383	0.89[ASN][1000 genomes]
rs10215570	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10224409	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10226374	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235376	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245039	0.90[ASN][1000 genomes]
rs10249625	0.89[ASN][1000 genomes]
rs10269645	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10954137	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13222182	0.86[ASN][1000 genomes]
rs13226877	0.89[ASN][1000 genomes]
rs13229096	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13230620	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13233772	0.88[ASN][1000 genomes]
rs13234088	0.90[ASN][1000 genomes]
rs13237208	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13237302	0.90[ASN][1000 genomes]
rs13237312	0.90[ASN][1000 genomes]
rs13238619	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13243724	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995971	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2048474	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2158123	0.90[ASN][1000 genomes]
rs28875814	0.91[ASN][1000 genomes]
rs3914181	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4731336	0.89[EUR][1000 genomes]
rs67417372	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7782930	0.88[ASN][1000 genomes]
rs7785183	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797587	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7798039	0.90[ASN][1000 genomes]
rs9656355	0.93[ASN][1000 genomes]
rs979425	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79932600-79938800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79932800-79938800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:79936800-79941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:79936800-79941200	Weak transcription	Osteobl	bone
5	chr7:79937000-79938800	Weak transcription	Primary T cells from cord blood	blood
6	chr7:79937000-79941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:79937000-79941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:79937200-79941000	Weak transcription	A549	lung
9	chr7:79937200-79941000	Weak transcription	HMEC	breast
10	chr7:79937200-79941200	Weak transcription	NHLF	lung
11	chr7:79937200-79941400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:79937200-79949000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:79937400-79940000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:79937400-79940400	Weak transcription	NHEK	skin
15	chr7:79937400-79941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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