Variant report

Variant	rs13229096
Chromosome Location	chr7:79940565-79940566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10081383	0.89[ASN][1000 genomes]
rs10215570	0.93[ASN][1000 genomes]
rs10224409	0.93[ASN][1000 genomes]
rs10226374	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10235376	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245039	0.85[ASN][1000 genomes]
rs10249625	0.89[ASN][1000 genomes]
rs10269645	0.93[ASN][1000 genomes]
rs10954137	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13222182	0.86[ASN][1000 genomes]
rs13226877	0.89[ASN][1000 genomes]
rs13230620	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13233772	0.88[ASN][1000 genomes]
rs13234088	0.90[ASN][1000 genomes]
rs13237208	0.88[ASN][1000 genomes]
rs13237302	0.90[ASN][1000 genomes]
rs13237312	0.90[ASN][1000 genomes]
rs13238619	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13243724	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995971	0.88[ASN][1000 genomes]
rs2048474	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2158123	0.90[ASN][1000 genomes]
rs28584961	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28875814	0.93[ASN][1000 genomes]
rs304774	0.86[JPT][hapmap]
rs304775	0.92[JPT][hapmap]
rs37931	0.80[ASN][1000 genomes]
rs3914181	0.93[ASN][1000 genomes]
rs4731336	0.86[EUR][1000 genomes]
rs67417372	0.90[ASN][1000 genomes]
rs6966532	0.86[JPT][hapmap]
rs7782930	0.88[ASN][1000 genomes]
rs7785183	0.90[ASN][1000 genomes]
rs7797587	0.90[ASN][1000 genomes]
rs7798039	0.90[ASN][1000 genomes]
rs9656355	0.88[ASN][1000 genomes]
rs979425	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79936800-79941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:79936800-79941200	Weak transcription	Osteobl	bone
3	chr7:79937000-79941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:79937000-79941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79937200-79941000	Weak transcription	A549	lung
6	chr7:79937200-79941000	Weak transcription	HMEC	breast
7	chr7:79937200-79941200	Weak transcription	NHLF	lung
8	chr7:79937200-79941400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:79937200-79949000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:79937400-79941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:79938400-79941000	Weak transcription	NH-A	brain
12	chr7:79938800-79942000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:79938800-79942200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:79938800-79942400	Enhancers	Primary T cells from cord blood	blood
15	chr7:79939000-79941800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr7:79939200-79940600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:79939400-79940800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:79939400-79943400	Enhancers	HUVEC	blood vessel
19	chr7:79939600-79941000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:79939600-79941000	Weak transcription	Small Intestine	intestine
21	chr7:79939600-79941800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:79939800-79941400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:79940000-79942800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr7:79940200-79941000	Enhancers	Fetal Intestine Large	intestine
25	chr7:79940400-79940600	Enhancers	Fetal Kidney	kidney
26	chr7:79940400-79940800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr7:79940400-79941200	Enhancers	NHEK	skin
28	chr7:79940400-79942000	Enhancers	Stomach Mucosa	stomach
29	chr7:79940400-79942200	Enhancers	Fetal Lung	lung

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