Variant report
| Variant | rs4731329 |
|---|---|
| Chromosome Location | chr7:79924327-79924328 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10226374 | 0.89[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10235376 | 0.87[EUR][1000 genomes] |
| rs10954137 | 0.91[EUR][1000 genomes] |
| rs13224358 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13226877 | 0.91[EUR][1000 genomes] |
| rs13243724 | 0.91[EUR][1000 genomes] |
| rs1995971 | 0.98[EUR][1000 genomes] |
| rs2048474 | 0.81[EUR][1000 genomes] |
| rs304732 | 0.90[ASN][1000 genomes] |
| rs306728 | 0.87[ASN][1000 genomes] |
| rs37919 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs37921 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs37929 | 0.89[ASN][1000 genomes] |
| rs37930 | 0.87[ASN][1000 genomes] |
| rs37935 | 0.82[JPT][hapmap] |
| rs37936 | 0.82[JPT][hapmap] |
| rs43222 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4731318 | 0.80[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4731336 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs475103 | 0.95[ASN][1000 genomes] |
| rs493722 | 0.90[ASN][1000 genomes] |
| rs504540 | 0.96[ASN][1000 genomes] |
| rs579611 | 0.98[ASN][1000 genomes] |
| rs601671 | 0.95[ASN][1000 genomes] |
| rs623820 | 0.97[ASN][1000 genomes] |
| rs673193 | 0.99[ASN][1000 genomes] |
| rs7782930 | 0.95[EUR][1000 genomes] |
| rs7785183 | 0.98[EUR][1000 genomes] |
| rs7797587 | 0.98[EUR][1000 genomes] |
| rs7798039 | 0.95[EUR][1000 genomes] |
| rs979425 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024312 | chr7:79832637-80004812 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029180 | chr7:79832637-80017560 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79923800-79927600 | Weak transcription | Osteobl | bone |
| 2 | chr7:79923800-79932400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
