Variant report
| Variant | rs37936 |
|---|---|
| Chromosome Location | chr7:79969058-79969059 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:79946374..79948233-chr7:79968387..79970856,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240347 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1074387 | 0.82[ASN][1000 genomes] |
| rs1711470 | 0.93[EUR][1000 genomes] |
| rs304740 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs304752 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs304756 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs304757 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs304762 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs304763 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs304771 | 0.82[ASN][1000 genomes] |
| rs304772 | 0.93[ASN][1000 genomes] |
| rs304776 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs304779 | 0.91[ASN][1000 genomes] |
| rs304783 | 0.91[ASN][1000 genomes] |
| rs37919 | 0.82[JPT][hapmap] |
| rs37921 | 0.82[JPT][hapmap] |
| rs37933 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs37935 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs37937 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs388392 | 0.92[ASN][1000 genomes] |
| rs43222 | 0.82[JPT][hapmap] |
| rs7777441 | 0.80[ASN][1000 genomes] |
| rs7799684 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024312 | chr7:79832637-80004812 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029180 | chr7:79832637-80017560 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv528393 | chr7:79964962-79969058 | Flanking Active TSS Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79954200-79975400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:79966200-79971200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
