Variant report

Variant	rs1711470
Chromosome Location	chr7:79979916-79979917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10224913	0.84[ASN][1000 genomes]
rs10231181	0.87[ASN][1000 genomes]
rs10255079	0.83[ASN][1000 genomes]
rs10261395	0.84[ASN][1000 genomes]
rs10265717	0.87[ASN][1000 genomes]
rs10267427	0.85[ASN][1000 genomes]
rs10269668	0.82[ASN][1000 genomes]
rs10486933	0.84[ASN][1000 genomes]
rs10486935	0.85[ASN][1000 genomes]
rs1074389	0.85[ASN][1000 genomes]
rs13224803	0.84[ASN][1000 genomes]
rs13228508	0.81[ASN][1000 genomes]
rs13238342	0.90[ASN][1000 genomes]
rs1511682	0.89[ASN][1000 genomes]
rs17235042	0.82[ASN][1000 genomes]
rs1818432	0.88[ASN][1000 genomes]
rs1878214	0.87[ASN][1000 genomes]
rs304740	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs304752	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs304756	0.88[EUR][1000 genomes]
rs304757	0.88[EUR][1000 genomes]
rs304762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs304763	0.90[EUR][1000 genomes]
rs34631466	0.85[ASN][1000 genomes]
rs37935	0.93[EUR][1000 genomes]
rs37936	0.93[EUR][1000 genomes]
rs37937	0.93[EUR][1000 genomes]
rs4373467	0.85[ASN][1000 genomes]
rs4487675	0.85[ASN][1000 genomes]
rs9655865	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79978400-79984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79979200-79980400	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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