Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10224913	0.90[ASN][1000 genomes]
rs10231181	0.92[ASN][1000 genomes]
rs10255079	0.92[ASN][1000 genomes]
rs10261395	0.90[ASN][1000 genomes]
rs10265717	0.92[ASN][1000 genomes]
rs10267427	0.94[ASN][1000 genomes]
rs10269668	0.92[ASN][1000 genomes]
rs10486933	0.90[ASN][1000 genomes]
rs10486935	0.94[ASN][1000 genomes]
rs1074389	0.94[ASN][1000 genomes]
rs13224803	0.90[ASN][1000 genomes]
rs13228508	0.86[ASN][1000 genomes]
rs1511682	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711470	0.90[ASN][1000 genomes]
rs17235042	0.92[ASN][1000 genomes]
rs1818432	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878214	0.92[ASN][1000 genomes]
rs304774	0.84[AMR][1000 genomes]
rs304775	0.84[AMR][1000 genomes]
rs34631466	0.94[ASN][1000 genomes]
rs37938	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4373467	0.94[ASN][1000 genomes]
rs4487675	0.94[ASN][1000 genomes]
rs6467113	0.92[EUR][1000 genomes]
rs9655865	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79978400-79984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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