Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79982868..79985812-chr7:79986232..79988708,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10224913	0.92[ASN][1000 genomes]
rs10231181	0.92[ASN][1000 genomes]
rs10255079	0.92[ASN][1000 genomes]
rs10261395	0.92[ASN][1000 genomes]
rs10265717	0.94[ASN][1000 genomes]
rs10267427	0.97[ASN][1000 genomes]
rs10269668	0.94[ASN][1000 genomes]
rs10486933	0.92[ASN][1000 genomes]
rs10486935	0.97[ASN][1000 genomes]
rs1074389	0.97[ASN][1000 genomes]
rs13224803	0.92[ASN][1000 genomes]
rs13228508	0.86[ASN][1000 genomes]
rs13238342	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1511682	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711470	0.88[ASN][1000 genomes]
rs17235042	0.94[ASN][1000 genomes]
rs1878214	0.94[ASN][1000 genomes]
rs304774	0.80[AMR][1000 genomes]
rs304775	0.80[AMR][1000 genomes]
rs34631466	0.97[ASN][1000 genomes]
rs37938	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4373467	0.97[ASN][1000 genomes]
rs4487675	0.97[ASN][1000 genomes]
rs6467113	0.90[EUR][1000 genomes]
rs9655865	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79984600-79985200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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