Variant report

Variant	rs4487675
Chromosome Location	chr7:79995391-79995392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:79995277-79995451	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10224403	0.95[EUR][1000 genomes]
rs10224913	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10227851	0.94[EUR][1000 genomes]
rs10228269	0.92[EUR][1000 genomes]
rs10228938	0.97[EUR][1000 genomes]
rs10231181	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10255079	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10261395	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10265717	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10267427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269668	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10282378	0.95[EUR][1000 genomes]
rs10486933	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10486935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1074389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224803	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13228508	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13238342	0.94[ASN][1000 genomes]
rs1511682	0.96[ASN][1000 genomes]
rs1711470	0.85[ASN][1000 genomes]
rs17235042	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1818432	0.97[ASN][1000 genomes]
rs1878214	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878314	0.86[EUR][1000 genomes]
rs2040896	0.92[EUR][1000 genomes]
rs304773	0.81[ASN][1000 genomes]
rs304774	0.81[ASN][1000 genomes]
rs304775	0.81[ASN][1000 genomes]
rs34631466	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439899	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4373467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966532	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs757706	0.94[EUR][1000 genomes]
rs9655865	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv525104	chr7:79991029-80002223	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79986200-79995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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