Variant report

Variant	rs10227851
Chromosome Location	chr7:79973826-79973827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79971854..79974583-chr7:79981836..79984361,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215570	0.81[ASN][1000 genomes]
rs10224403	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10224409	0.81[ASN][1000 genomes]
rs10224913	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10228269	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10228938	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10231181	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10255079	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261395	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10265717	0.91[CEU][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10267427	0.91[CEU][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10269645	0.81[ASN][1000 genomes]
rs10269668	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10282378	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10480799	0.90[CEU][hapmap];0.87[JPT][hapmap]
rs10486933	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10486935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1074389	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13224803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13228508	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13230620	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17235042	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878214	0.91[CEU][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1878314	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2040896	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28875814	0.81[ASN][1000 genomes]
rs304773	0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs304774	0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs304775	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34631466	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35439899	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37931	0.90[ASN][1000 genomes]
rs37938	1.00[ASN][1000 genomes]
rs3847097	0.91[ASN][1000 genomes]
rs3914181	0.81[ASN][1000 genomes]
rs4373467	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4487675	0.94[EUR][1000 genomes]
rs6467113	0.97[ASN][1000 genomes]
rs6966532	0.91[CEU][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs757706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788512	0.83[JPT][hapmap]
rs9655865	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3331683	chr7:79972466-79974564	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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