Variant report

Variant	rs3847097
Chromosome Location	chr7:79959755-79959756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215570	0.82[ASN][1000 genomes]
rs10224403	0.80[ASN][1000 genomes]
rs10224409	0.82[ASN][1000 genomes]
rs10227851	0.91[ASN][1000 genomes]
rs10228938	0.80[ASN][1000 genomes]
rs10267427	1.00[YRI][hapmap]
rs10269645	0.82[ASN][1000 genomes]
rs10282378	0.91[ASN][1000 genomes]
rs10480799	1.00[YRI][hapmap]
rs13230620	1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs13238619	0.80[ASN][1000 genomes]
rs28875814	0.82[ASN][1000 genomes]
rs304773	0.86[ASN][1000 genomes]
rs304774	0.86[ASN][1000 genomes]
rs304775	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs35439899	0.85[ASN][1000 genomes]
rs37931	0.96[ASN][1000 genomes]
rs37938	0.91[ASN][1000 genomes]
rs3914181	0.82[ASN][1000 genomes]
rs6467113	0.94[ASN][1000 genomes]
rs6966532	1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs757706	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79959400-79959800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79959400-79959800	Enhancers	HSMMtube	muscle
4	chr7:79959400-79960000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79959400-79960000	Enhancers	NH-A	brain
6	chr7:79959400-79960000	Enhancers	NHEK	skin
7	chr7:79959400-79960400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:79959400-79960400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:79959400-79960400	Enhancers	NHDF-Ad	bronchial
10	chr7:79959400-79960400	Enhancers	NHLF	lung
11	chr7:79959400-79960400	Enhancers	Osteobl	bone
12	chr7:79959400-79961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:79959400-79961000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:79959400-79961000	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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