Variant report

Variant	rs10282378
Chromosome Location	chr7:79978633-79978634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215570	0.81[ASN][1000 genomes]
rs10224403	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10224409	0.81[ASN][1000 genomes]
rs10224913	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10227851	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228269	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10228938	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10231181	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10255079	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10261395	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10265717	0.84[CEU][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];1.00[MKK][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10267427	0.83[CEU][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10269645	0.81[ASN][1000 genomes]
rs10269668	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10480799	0.83[CEU][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];1.00[MKK][hapmap]
rs10486933	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10486935	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1074389	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13224803	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13228508	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13230620	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17235042	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878214	0.84[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1878314	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2040896	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28875814	0.81[ASN][1000 genomes]
rs304773	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs304774	0.83[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs304775	0.83[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34631466	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35439899	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37931	0.90[ASN][1000 genomes]
rs37938	1.00[ASN][1000 genomes]
rs3847097	0.91[ASN][1000 genomes]
rs3914181	0.81[ASN][1000 genomes]
rs4373467	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4487675	0.95[EUR][1000 genomes]
rs6467113	0.97[ASN][1000 genomes]
rs6966532	0.84[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs757706	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788512	0.90[JPT][hapmap]
rs9655865	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79977800-79979000	Weak transcription	Fetal Brain Male	brain
2	chr7:79977800-79979200	Weak transcription	Spleen	Spleen
3	chr7:79978000-79979200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:79978400-79984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:79978600-79979000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links