Variant report

Variant	rs757706
Chromosome Location	chr7:79975513-79975514
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10215570	0.81[ASN][1000 genomes]
rs10224403	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10224409	0.81[ASN][1000 genomes]
rs10224913	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10227851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228269	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10228938	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10231181	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10255079	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261395	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10265717	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10267427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10269645	0.81[ASN][1000 genomes]
rs10269668	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10282378	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486933	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10486935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1074389	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13224803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13228508	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13230620	0.82[ASN][1000 genomes]
rs17235042	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878214	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1878314	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2040896	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28875814	0.81[ASN][1000 genomes]
rs304773	0.95[ASN][1000 genomes]
rs304774	0.95[ASN][1000 genomes]
rs304775	0.95[ASN][1000 genomes]
rs34631466	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35439899	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37931	0.90[ASN][1000 genomes]
rs37938	1.00[ASN][1000 genomes]
rs3847097	0.91[ASN][1000 genomes]
rs3914181	0.81[ASN][1000 genomes]
rs4373467	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4487675	0.94[EUR][1000 genomes]
rs6467113	0.97[ASN][1000 genomes]
rs6966532	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9655865	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79975200-79978400	Enhancers	HMEC	breast
2	chr7:79975400-79975600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr7:79975400-79977200	Enhancers	Hela-S3	cervix
4	chr7:79975400-79977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:79975400-79977800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:79975400-79978000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:79975400-79978000	Enhancers	NHEK	skin
8	chr7:79975400-79978400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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