Variant report
| Variant | rs7788512 |
|---|---|
| Chromosome Location | chr7:79995843-79995844 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10224913 | 0.94[ASN][1000 genomes] |
| rs10231181 | 0.88[ASN][1000 genomes] |
| rs10255079 | 0.92[ASN][1000 genomes] |
| rs10261395 | 0.94[ASN][1000 genomes] |
| rs10265717 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10267427 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs10269668 | 0.97[ASN][1000 genomes] |
| rs10480799 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs10486933 | 0.94[ASN][1000 genomes] |
| rs10486935 | 0.99[ASN][1000 genomes] |
| rs1074387 | 1.00[EUR][1000 genomes] |
| rs1074389 | 0.99[ASN][1000 genomes] |
| rs13224803 | 0.94[ASN][1000 genomes] |
| rs13228508 | 0.86[ASN][1000 genomes] |
| rs13238342 | 0.93[ASN][1000 genomes] |
| rs1511682 | 0.94[ASN][1000 genomes] |
| rs1511683 | 1.00[EUR][1000 genomes] |
| rs1711470 | 0.86[ASN][1000 genomes] |
| rs17235042 | 0.97[ASN][1000 genomes] |
| rs1818432 | 0.96[ASN][1000 genomes] |
| rs1878214 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs304773 | 0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs304774 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs304775 | 0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs34631466 | 0.99[ASN][1000 genomes] |
| rs4373467 | 0.99[ASN][1000 genomes] |
| rs4487675 | 0.99[ASN][1000 genomes] |
| rs6467126 | 1.00[EUR][1000 genomes] |
| rs6966532 | 0.91[JPT][hapmap] |
| rs6978306 | 0.98[EUR][1000 genomes] |
| rs6978602 | 0.97[EUR][1000 genomes] |
| rs7777441 | 1.00[EUR][1000 genomes] |
| rs7799684 | 1.00[EUR][1000 genomes] |
| rs9655865 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024312 | chr7:79832637-80004812 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029180 | chr7:79832637-80017560 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831042 | chr7:79984079-80122312 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv525104 | chr7:79991029-80002223 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
