Variant report
| Variant | rs1074387 |
|---|---|
| Chromosome Location | chr7:79993442-79993443 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1511683 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs304740 | 0.84[ASN][1000 genomes] |
| rs304752 | 0.96[ASN][1000 genomes] |
| rs304756 | 0.83[ASN][1000 genomes] |
| rs304757 | 0.83[ASN][1000 genomes] |
| rs304762 | 0.95[ASN][1000 genomes] |
| rs304763 | 0.98[ASN][1000 genomes] |
| rs304771 | 0.98[ASN][1000 genomes] |
| rs304772 | 0.87[ASN][1000 genomes] |
| rs304776 | 0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs304779 | 0.85[ASN][1000 genomes] |
| rs304783 | 0.85[ASN][1000 genomes] |
| rs37935 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs37936 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs37937 | 0.82[ASN][1000 genomes] |
| rs388392 | 0.86[ASN][1000 genomes] |
| rs6467126 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6467133 | 0.93[YRI][hapmap] |
| rs6467134 | 0.90[YRI][hapmap] |
| rs6978306 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6978602 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7777441 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7788512 | 0.93[CEU][hapmap] |
| rs7792158 | 0.89[YRI][hapmap] |
| rs7799684 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024312 | chr7:79832637-80004812 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029180 | chr7:79832637-80017560 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831042 | chr7:79984079-80122312 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv525104 | chr7:79991029-80002223 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79986200-79995400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
