Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1074387	0.86[ASN][1000 genomes]
rs1511683	0.82[ASN][1000 genomes]
rs304740	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs304752	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs304756	0.82[EUR][1000 genomes]
rs304757	0.82[EUR][1000 genomes]
rs304762	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs304763	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs304771	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs304772	0.99[ASN][1000 genomes]
rs304773	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs304779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs304783	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs304800	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs304802	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs304803	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs37919	0.82[JPT][hapmap]
rs37933	0.85[ASN][1000 genomes]
rs37935	0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs37936	0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs37937	0.92[ASN][1000 genomes]
rs388392	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467126	0.82[ASN][1000 genomes]
rs7777441	0.84[ASN][1000 genomes]
rs7799684	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80000400-80008000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:80001800-80007200	Weak transcription	HSMMtube	muscle
3	chr7:80002600-80007600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:80002600-80009600	Weak transcription	Left Ventricle	heart
5	chr7:80003200-80007800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:80003200-80007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:80003200-80013600	Weak transcription	Gastric	stomach
8	chr7:80004200-80004600	Enhancers	Liver	Liver

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