Variant report

Variant	rs304783
Chromosome Location	chr7:80018114-80018115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1074387	0.85[ASN][1000 genomes]
rs1511683	0.81[ASN][1000 genomes]
rs304740	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs304752	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs304762	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs304763	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs304771	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs304772	0.98[ASN][1000 genomes]
rs304773	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs304776	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs304779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304800	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs304802	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs304803	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs37919	0.82[JPT][hapmap]
rs37921	0.82[JPT][hapmap]
rs37933	0.85[ASN][1000 genomes]
rs37935	0.80[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[ASN][1000 genomes]
rs37936	0.80[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[ASN][1000 genomes]
rs37937	0.91[ASN][1000 genomes]
rs388392	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs43222	0.82[JPT][hapmap]
rs6467126	0.81[ASN][1000 genomes]
rs7777441	0.84[ASN][1000 genomes]
rs7799684	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80015800-80022000	Weak transcription	HepG2	liver
2	chr7:80017200-80029400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80017400-80021400	Weak transcription	Liver	Liver
4	chr7:80017600-80019000	Weak transcription	A549	lung
5	chr7:80017600-80023400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:80018000-80019000	Weak transcription	Fetal Kidney	kidney

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