Variant report

Variant	rs37933
Chromosome Location	chr7:79962755-79962756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs304740	0.91[ASN][1000 genomes]
rs304772	0.86[ASN][1000 genomes]
rs304776	0.85[ASN][1000 genomes]
rs304779	0.85[ASN][1000 genomes]
rs304783	0.85[ASN][1000 genomes]
rs37935	0.85[CHB][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs37936	0.85[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs37937	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs388392	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79960000-79964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:79960400-79963800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:79960400-79964800	Weak transcription	HSMMtube	muscle
5	chr7:79961000-79963400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:79961000-79963400	Weak transcription	HSMM	muscle
7	chr7:79961400-79963600	Weak transcription	Stomach Mucosa	stomach
8	chr7:79962200-79963000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:79962400-79962800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:79962400-79963200	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:79962400-79964800	Enhancers	Brain Hippocampus Middle	brain
12	chr7:79962600-79962800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:79962600-79962800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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