Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10081383	0.90[ASN][1000 genomes]
rs10215570	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10224409	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10235376	0.90[ASN][1000 genomes]
rs10245039	0.84[ASN][1000 genomes]
rs10249625	0.90[ASN][1000 genomes]
rs10265717	0.81[JPT][hapmap]
rs10267427	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10269645	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10480799	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10954137	0.87[ASN][1000 genomes]
rs12666091	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13222182	0.93[ASN][1000 genomes]
rs13226877	0.90[ASN][1000 genomes]
rs13230620	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs13233772	0.87[ASN][1000 genomes]
rs13234088	0.89[ASN][1000 genomes]
rs13237208	0.87[ASN][1000 genomes]
rs13237302	0.89[ASN][1000 genomes]
rs13237312	0.89[ASN][1000 genomes]
rs13238619	0.80[ASN][1000 genomes]
rs13243724	0.89[ASN][1000 genomes]
rs1878214	0.80[JPT][hapmap]
rs1995971	0.87[ASN][1000 genomes]
rs2048474	0.87[ASN][1000 genomes]
rs2158123	0.86[ASN][1000 genomes]
rs28875814	0.83[ASN][1000 genomes]
rs304773	0.93[JPT][hapmap]
rs304774	0.87[JPT][hapmap]
rs304775	0.93[JPT][hapmap]
rs3914181	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67417372	0.86[ASN][1000 genomes]
rs6966532	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7782930	0.89[ASN][1000 genomes]
rs7785183	0.89[ASN][1000 genomes]
rs7788512	0.82[JPT][hapmap]
rs7797587	0.89[ASN][1000 genomes]
rs7798039	0.89[ASN][1000 genomes]
rs9656355	0.87[ASN][1000 genomes]
rs979425	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2761340	chr7:79905897-79922486	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79906600-79912800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:79907400-79916400	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:79907800-79914000	Weak transcription	Fetal Lung	lung
4	chr7:79908000-79916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:79908000-79916600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:79908200-79916400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:79909000-79912600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:79909200-79912800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:79909200-79912800	Weak transcription	Psoas Muscle	Psoas
10	chr7:79909400-79912400	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:79909400-79914000	Weak transcription	HSMMtube	muscle
12	chr7:79909400-79916400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:79909600-79914200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:79910200-79914000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:79911000-79911200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr7:79911000-79911200	Enhancers	Small Intestine	intestine

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