Variant report

Variant	rs779029
Chromosome Location	chr3:21957224-21957225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21939959..21942443-chr3:21956783..21959351,2	K562	blood:

Extended variants
information (count: 253 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:241)

rs_ID	r²[population]
rs10433570	0.95[ASN][1000 genomes]
rs10440125	0.90[EUR][1000 genomes]
rs10510521	0.95[ASN][1000 genomes]
rs10865774	0.94[ASN][1000 genomes]
rs10865775	0.92[ASN][1000 genomes]
rs10865776	0.94[ASN][1000 genomes]
rs10865777	0.94[ASN][1000 genomes]
rs10865778	0.94[ASN][1000 genomes]
rs10865779	0.82[ASN][1000 genomes]
rs10865780	0.81[ASN][1000 genomes]
rs11129029	0.95[ASN][1000 genomes]
rs1120052	0.93[ASN][1000 genomes]
rs11706252	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs11714007	0.94[ASN][1000 genomes]
rs11717781	0.83[ASN][1000 genomes]
rs12330142	0.82[ASN][1000 genomes]
rs12487611	0.94[ASN][1000 genomes]
rs12487653	0.94[ASN][1000 genomes]
rs12489286	0.90[ASN][1000 genomes]
rs12490987	0.95[ASN][1000 genomes]
rs12491046	0.94[ASN][1000 genomes]
rs12493892	0.94[ASN][1000 genomes]
rs12496539	0.93[ASN][1000 genomes]
rs12638980	0.90[EUR][1000 genomes]
rs13061226	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs13066816	0.82[ASN][1000 genomes]
rs13072115	0.93[ASN][1000 genomes]
rs13076554	0.92[ASN][1000 genomes]
rs13077139	0.93[ASN][1000 genomes]
rs13078547	0.91[ASN][1000 genomes]
rs13091957	0.93[ASN][1000 genomes]
rs13091998	0.93[ASN][1000 genomes]
rs13092149	0.93[ASN][1000 genomes]
rs13092430	0.93[ASN][1000 genomes]
rs13095013	0.91[EUR][1000 genomes]
rs13096987	0.93[ASN][1000 genomes]
rs13097724	0.91[ASN][1000 genomes]
rs13097840	0.91[ASN][1000 genomes]
rs1351323	0.94[ASN][1000 genomes]
rs1383073	0.90[EUR][1000 genomes]
rs1391330	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs1391331	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs1479961	0.95[ASN][1000 genomes]
rs1479962	0.91[EUR][1000 genomes]
rs1479963	0.90[EUR][1000 genomes]
rs1479964	0.90[EUR][1000 genomes]
rs1479965	0.91[EUR][1000 genomes]
rs1479966	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs1479967	0.95[ASN][1000 genomes]
rs1479968	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs1479969	0.90[EUR][1000 genomes]
rs1479986	0.94[ASN][1000 genomes]
rs1479987	0.94[ASN][1000 genomes]
rs1479988	0.94[ASN][1000 genomes]
rs1479989	0.94[ASN][1000 genomes]
rs1486332	0.91[EUR][1000 genomes]
rs1486333	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs1486372	0.90[EUR][1000 genomes]
rs1497925	0.82[ASN][1000 genomes]
rs1497938	0.90[EUR][1000 genomes]
rs1497939	0.90[EUR][1000 genomes]
rs1553085	0.88[ASN][1000 genomes]
rs1564411	0.94[ASN][1000 genomes]
rs1626065	0.82[ASN][1000 genomes]
rs1684488	0.80[ASN][1000 genomes]
rs1684495	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs1694015	0.82[ASN][1000 genomes]
rs1694016	0.81[ASN][1000 genomes]
rs1694042	0.90[EUR][1000 genomes]
rs17010120	0.95[ASN][1000 genomes]
rs17010126	0.95[ASN][1000 genomes]
rs17010229	0.94[ASN][1000 genomes]
rs17010304	0.84[ASN][1000 genomes]
rs17010418	0.82[ASN][1000 genomes]
rs1842308	0.91[EUR][1000 genomes]
rs1842309	0.91[EUR][1000 genomes]
rs1843634	0.87[EUR][1000 genomes]
rs1846165	0.88[EUR][1000 genomes]
rs1846166	0.90[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs2061938	0.91[EUR][1000 genomes]
rs2061939	0.90[EUR][1000 genomes]
rs2061940	0.91[EUR][1000 genomes]
rs2593314	0.82[ASN][1000 genomes]
rs2593325	0.82[ASN][1000 genomes]
rs259482	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs259508	0.97[ASN][1000 genomes]
rs259509	0.97[ASN][1000 genomes]
rs259510	0.97[ASN][1000 genomes]
rs259511	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs259513	0.96[ASN][1000 genomes]
rs259514	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs259515	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs259517	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs259518	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs259520	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs259521	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs259537	0.98[ASN][1000 genomes]
rs259538	0.98[ASN][1000 genomes]
rs2620536	0.84[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs34025961	0.80[ASN][1000 genomes]
rs34164902	0.95[ASN][1000 genomes]
rs34598190	0.91[ASN][1000 genomes]
rs34708854	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34718882	0.93[ASN][1000 genomes]
rs34756955	0.90[ASN][1000 genomes]
rs34815085	0.89[ASN][1000 genomes]
rs34904582	0.93[ASN][1000 genomes]
rs35338441	0.93[ASN][1000 genomes]
rs35478822	0.82[ASN][1000 genomes]
rs35541916	0.82[ASN][1000 genomes]
rs35976399	0.92[ASN][1000 genomes]
rs35993195	0.89[ASN][1000 genomes]
rs36015330	0.93[ASN][1000 genomes]
rs3821386	0.90[EUR][1000 genomes]
rs3821388	0.90[EUR][1000 genomes]
rs3821389	0.91[EUR][1000 genomes]
rs3821390	0.89[EUR][1000 genomes]
rs3821392	0.90[EUR][1000 genomes]
rs3821393	0.89[EUR][1000 genomes]
rs3821394	0.90[EUR][1000 genomes]
rs4094000	0.94[ASN][1000 genomes]
rs4270525	0.89[ASN][1000 genomes]
rs4271936	0.82[ASN][1000 genomes]
rs4348015	0.89[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs4350938	0.95[ASN][1000 genomes]
rs4355303	0.93[ASN][1000 genomes]
rs4370048	0.94[ASN][1000 genomes]
rs4420894	0.82[ASN][1000 genomes]
rs4440143	0.82[ASN][1000 genomes]
rs4610243	0.82[ASN][1000 genomes]
rs4610244	0.82[ASN][1000 genomes]
rs472117	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs473395	0.82[ASN][1000 genomes]
rs474387	0.84[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs476982	0.87[ASN][1000 genomes]
rs478011	0.87[ASN][1000 genomes]
rs478832	0.84[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs479923	0.85[ASN][1000 genomes]
rs485483	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs485569	0.83[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs4858370	0.97[ASN][1000 genomes]
rs500881	0.82[ASN][1000 genomes]
rs501056	0.82[ASN][1000 genomes]
rs502259	0.82[ASN][1000 genomes]
rs503119	0.82[ASN][1000 genomes]
rs504039	0.86[CEU][hapmap];0.87[ASN][1000 genomes]
rs504757	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs504917	0.82[ASN][1000 genomes]
rs509513	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs521724	0.85[ASN][1000 genomes]
rs536133	0.82[ASN][1000 genomes]
rs536196	0.82[ASN][1000 genomes]
rs536986	0.87[ASN][1000 genomes]
rs537870	0.84[ASN][1000 genomes]
rs549089	0.84[ASN][1000 genomes]
rs559082	0.82[ASN][1000 genomes]
rs559861	0.82[ASN][1000 genomes]
rs559894	0.83[ASN][1000 genomes]
rs563648	0.82[ASN][1000 genomes]
rs568153	0.85[ASN][1000 genomes]
rs581184	0.82[ASN][1000 genomes]
rs586425	0.80[ASN][1000 genomes]
rs599540	0.81[ASN][1000 genomes]
rs610316	0.87[ASN][1000 genomes]
rs610320	0.87[ASN][1000 genomes]
rs611146	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs611545	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs613768	0.82[ASN][1000 genomes]
rs615095	0.82[ASN][1000 genomes]
rs618682	0.82[ASN][1000 genomes]
rs625615	0.84[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs627323	0.83[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs627773	0.85[ASN][1000 genomes]
rs627776	0.82[ASN][1000 genomes]
rs628155	0.82[ASN][1000 genomes]
rs628226	0.82[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs629944	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs630299	0.89[CHB][hapmap]
rs630769	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs631246	0.83[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs632070	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs638809	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs638844	0.83[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs641517	0.87[ASN][1000 genomes]
rs641518	0.82[ASN][1000 genomes]
rs641910	0.82[ASN][1000 genomes]
rs642045	0.87[ASN][1000 genomes]
rs645017	0.82[ASN][1000 genomes]
rs6550633	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs662789	0.82[ASN][1000 genomes]
rs66575668	0.93[ASN][1000 genomes]
rs67108462	0.95[ASN][1000 genomes]
rs671377	0.85[ASN][1000 genomes]
rs67326109	0.95[ASN][1000 genomes]
rs680685	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7430341	0.94[ASN][1000 genomes]
rs7433115	0.87[EUR][1000 genomes]
rs7623923	0.93[ASN][1000 genomes]
rs7628630	0.84[ASN][1000 genomes]
rs7635217	0.93[ASN][1000 genomes]
rs7635489	0.95[ASN][1000 genomes]
rs7635497	0.95[ASN][1000 genomes]
rs7636487	0.95[ASN][1000 genomes]
rs7639658	0.82[ASN][1000 genomes]
rs7645483	0.92[ASN][1000 genomes]
rs7646871	0.95[ASN][1000 genomes]
rs7646883	0.95[ASN][1000 genomes]
rs7646975	0.95[ASN][1000 genomes]
rs779030	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8179942	0.94[ASN][1000 genomes]
rs8179943	0.94[ASN][1000 genomes]
rs8180016	0.94[ASN][1000 genomes]
rs8180026	0.94[ASN][1000 genomes]
rs8180049	0.94[ASN][1000 genomes]
rs9310668	0.81[ASN][1000 genomes]
rs9809089	0.84[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs9809324	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs9810225	0.90[EUR][1000 genomes]
rs9811248	0.94[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes]
rs9811419	0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs9814232	0.92[ASN][1000 genomes]
rs9816540	0.91[EUR][1000 genomes]
rs9821571	0.90[EUR][1000 genomes]
rs9821707	0.90[EUR][1000 genomes]
rs9821722	0.90[EUR][1000 genomes]
rs9821912	0.90[EUR][1000 genomes]
rs9822011	0.90[EUR][1000 genomes]
rs9828376	0.90[EUR][1000 genomes]
rs9828689	0.87[EUR][1000 genomes]
rs9834671	0.90[EUR][1000 genomes]
rs9841763	0.90[EUR][1000 genomes]
rs9849994	0.83[ASN][1000 genomes]
rs9854012	0.91[EUR][1000 genomes]
rs9854895	0.84[ASN][1000 genomes]
rs9859150	0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9859355	0.90[EUR][1000 genomes]
rs9870712	0.82[ASN][1000 genomes]
rs9873106	0.90[EUR][1000 genomes]
rs9873232	0.90[EUR][1000 genomes]
rs9879603	0.88[EUR][1000 genomes]
rs9879858	0.93[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv998906	chr3:21921707-21962293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1014821	chr3:21929218-21962293	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv876615	chr3:21941259-21965999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21954400-21960800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:21955400-21960600	Weak transcription	NH-A	brain
3	chr3:21955600-21960600	Weak transcription	Fetal Stomach	stomach
4	chr3:21955600-21960800	Weak transcription	NHLF	lung
5	chr3:21955800-21961200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:21956200-21960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:21956400-21960800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:21956400-21960800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:21956600-21960400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:21956600-21960400	Weak transcription	NHDF-Ad	bronchial
11	chr3:21956800-21957400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:21956800-21957400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:21956800-21957400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:21956800-21960400	Weak transcription	Fetal Lung	lung
15	chr3:21957000-21957400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:21957000-21960400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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